rs6398202 SNP Detail

Summary

• ID
  rs6398202
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22817396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGTTGC TACAGGTGAG
  AGGTGGTGCC AGGTCTCCAG AGGGCTGCAT CCAGTGAGGG GTAGGGCCAG TTCTACACTA
  GGGCATCCAA GTGGTCCCTA GTGACTTGCC TGGACCAGGG ACATTCTCAT GTTCTCTAGT
  AGCAATATGA GCTACTGACA TTGACACTGA CCCCTGCCAC TGCGTTAGCC ACAGATGCAG
  W
  CATGGCCCTC AGCAGTAGCT CAGGCTGGGA CTTCACAATG GCCCCAGGTG GCAGGGCTGG
  CTACTCACAA CAGGCTACTC CTCTCCACCC TCGAGTCTCC AGTTCCATCT CTCTTCACAC
  TGCTCAAGCT GCTCCTCTTC TTTCTCCCAT CTGATAACCA CACACTCGCA CGTTGTGATT
  GCTCCCACTG GAGCCTGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804390	WI_WGS_9_22984111	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398202					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22817396 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	592 bp upstream