rs6398374 SNP Detail

Summary

• ID
  rs6398374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22817482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGGTC CCTAGTGACT
  TGCCTGGACC AGGGACATTC TCATGTTCTC TAGTAGCAAT ATGAGCTACT GACATTGACA
  CTGACCCCTG CCACTGCGTT AGCCACAGAT GCAGACATGG CCCTCAGCAG TAGCTCAGGC
  TGGGACTTCA CAATGGCCCC AGGTGGCAGG GCTGGCTACT CACAACAGGC TACTCCTCTC
  Y
  ACCCTCGAGT CTCCAGTTCC ATCTCTCTTC ACACTGCTCA AGCTGCTCCT CTTCTTTCTC
  CCATCTGATA ACCACACACT CGCACGTTGT GATTGCTCCC ACTGGAGCCT GCACACAGCA
  CTGGCGGACC CTTGGGTGAC ATTCTCCAGG AAGCAGTTGT CTATGGTCTG CCTGTGCCAG
  GGGCTCGAGG GCAGGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804562	WI_WGS_9_22984197	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398374					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22817482 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	506 bp upstream