rs6398394 SNP Detail

Summary

• ID
  rs6398394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTATCC TGCCAACCAA
  CAAAACCGTC TGCATGGTTT GTGGCCCTCA CCAGCAAGCC GTGGCCCAAT CCCACTAACA
  GGTAAACTGC AACGATATAT GGGGAAAGGC AAGTCTACTA ATTCAGAGCT AGGAGAAAGT
  CTTCCAAGAC AGAAAGCATA ATCCTGCTCA CGAAGAAATG TGTCAAGGGC ACCAAGACCC
  R
  TGCACACAAC CTAAACAGAG AGCCTGGGAG CCAGGGCTCT CAGCCTGCCT GCTAACACGA
  GCGCCCAAGA ACAGCCCTGC CTTACCCAAG GCACGAGTTC AGACTACAAA GTCAGTTACA
  GGATGGACTG GCAGCAGCCT CCATAAGAGC CAAGTGGACT GAAATGCTAC GACTGTCATG
  ACTCAAACTT GGACTAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8804582	WI_WGS_4_132802827	WI	MOUSE	f	SNP							G		A
ss37780908	NES09153703	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6398394					SNP	G	G	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780908	NES09153703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946358 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1158 bp distal
Rr86244	regulatory region 86244	443 bp proximal
Rr102925	regulatory region 102925	1044 bp proximal
Tssr43962	transcription start site region 43962	1956 bp upstream
Tssr43963	transcription start site region 43963	1897 bp upstream
Tssr43964	transcription start site region 43964	1785 bp upstream
Tssr43965	transcription start site region 43965	393 bp upstream