rs6398542 SNP Detail

Summary

• ID
  rs6398542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118455783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CAGATTCATT CATAATAAGT
  S
  CGCTGTCTAT CCCTTCTCCC TTTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8804732	WI_WGS_7_108499162	WI	MOUSE	f	SNP		C	G
ss46047297	mCV23653860	ABI	CRAMUS_MOUSE	f	SNP	C	C		G
ss145794249	ENSMUSSNP2303218	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6398542					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118455783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	181 bp distal
Iqck	IQ motif containing K	within coordinates
Knop1	lysine rich nucleolar protein 1	876 bp upstream
Rr654563	regulatory region 654563	958 bp distal
Rr654564	regulatory region 654564	775 bp distal
Rr654565	regulatory region 654565	72 bp distal
Tssr68731	transcription start site region 68731	762 bp downstream
Tssr74457	transcription start site region 74457	865 bp upstream
Tssr74458	transcription start site region 74458	600 bp upstream
Tssr74459	transcription start site region 74459	579 bp upstream
Tssr74460	transcription start site region 74460	546 bp upstream
Tssr74461	transcription start site region 74461	540 bp upstream
Tssr74462	transcription start site region 74462	520 bp upstream
Tssr74463	transcription start site region 74463	187 bp upstream