rs6398644 SNP Detail

Summary

• ID
  rs6398644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAGAA ATACTCAACC
  ACTTTGCAAG TTCGTTTCAT TTGCCTTCCG AAGAATGTGA GTCAACAGTG ATTTCTCATA
  CATAATAAAT GTATTTCATG TCAGGTTCTT CTGGTGGAAG CTTCCTGGGA GTCCAGCCAC
  CAACATTACT TCTATTTCTT CCATATGGCC AAGCATCCCA TCTGGTATTC AAGCTGCTTA
  Y
  GAAATTGAAA GCAGAAATCA ACTTTTCCTT TTTAAAGGTA ATTATAATAC TTGGTTCTGC
  CCCTGAGAAT CATTTAAGGA AAAAAATAAG TGAAGGAATT TGTACCACTT TTTATAAATG
  AAGACTAAAA ACAGTGCTCT AGACTTTTGT AACAATGGCT CTGAGATGTA AGTTAATTGT
  ACAAGCCCAA CTCTACAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804834	WI_WGS_9_7329504	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398644					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354818 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1272 bp downstream
Tssr83716	transcription start site region 83716	1911 bp downstream
Tssr83717	transcription start site region 83717	1900 bp downstream
Tssr83718	transcription start site region 83718	1866 bp downstream
Tssr83719	transcription start site region 83719	1833 bp downstream
Tssr83720	transcription start site region 83720	1800 bp downstream
Tssr83721	transcription start site region 83721	1569 bp downstream
Tssr83722	transcription start site region 83722	1288 bp downstream
Tssr83723	transcription start site region 83723	1241 bp downstream
Tssr83724	transcription start site region 83724	922 bp downstream
Tssr83725	transcription start site region 83725	785 bp downstream
Tssr83726	transcription start site region 83726	690 bp downstream
Tssr83727	transcription start site region 83727	20 bp downstream
Tssr83728	transcription start site region 83728	within coordinates
Tssr83729	transcription start site region 83729	6 bp upstream
Tssr83730	transcription start site region 83730	486 bp upstream
Tssr83731	transcription start site region 83731	500 bp upstream
Tssr83732	transcription start site region 83732	541 bp upstream
Tssr83733	transcription start site region 83733	578 bp upstream
Tssr83734	transcription start site region 83734	1006 bp upstream
Tssr83735	transcription start site region 83735	1028 bp upstream
Tssr88067	transcription start site region 88067	1805 bp upstream
Tssr88068	transcription start site region 88068	1759 bp upstream
Tssr88069	transcription start site region 88069	1313 bp upstream
Tssr88070	transcription start site region 88070	40 bp upstream
Tssr88071	transcription start site region 88071	597 bp downstream