rs6398720 SNP Detail

Summary

• ID
  rs6398720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCGAA GAATGTGAGT
  CAACAGTGAT TTCTCATACA TAATAAATGT ATTTCATGTC AGGTTCTTCT GGTGGAAGCT
  TCCTGGGAGT CCAGCCACCA ACATTACTTC TATTTCTTCC ATATGGCCAA GCATCCCATC
  TGGTATTCAA GCTGCTTACG AAATTGAAAG CAGAAATCAA CTTTTCCTTT TTAAAGGTAA
  Y
  TATAATACTT GGTTCTGCCC CTGAGAATCA TTTAAGGAAA AAAATAAGTG AAGGAATTTG
  TACCACTTTT TATAAATGAA GACTAAAAAC AGTGCTCTAG ACTTTTGTAA CAATGGCTCT
  GAGATGTAAG TTAATTGTAC AAGCCCAACT CTACAGGAAA TGCACACCTT TAAGAAAGGT
  ATATGAACTA TAAAATAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804910	WI_WGS_9_7329546	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398720					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354860 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1314 bp downstream
Tssr83716	transcription start site region 83716	1953 bp downstream
Tssr83717	transcription start site region 83717	1942 bp downstream
Tssr83718	transcription start site region 83718	1908 bp downstream
Tssr83719	transcription start site region 83719	1875 bp downstream
Tssr83720	transcription start site region 83720	1842 bp downstream
Tssr83721	transcription start site region 83721	1611 bp downstream
Tssr83722	transcription start site region 83722	1330 bp downstream
Tssr83723	transcription start site region 83723	1283 bp downstream
Tssr83724	transcription start site region 83724	964 bp downstream
Tssr83725	transcription start site region 83725	827 bp downstream
Tssr83726	transcription start site region 83726	732 bp downstream
Tssr83727	transcription start site region 83727	62 bp downstream
Tssr83728	transcription start site region 83728	37 bp downstream
Tssr83729	transcription start site region 83729	28 bp downstream
Tssr83730	transcription start site region 83730	444 bp upstream
Tssr83731	transcription start site region 83731	458 bp upstream
Tssr83732	transcription start site region 83732	499 bp upstream
Tssr83733	transcription start site region 83733	536 bp upstream
Tssr83734	transcription start site region 83734	964 bp upstream
Tssr83735	transcription start site region 83735	986 bp upstream
Tssr88067	transcription start site region 88067	1847 bp upstream
Tssr88068	transcription start site region 88068	1801 bp upstream
Tssr88069	transcription start site region 88069	1355 bp upstream
Tssr88070	transcription start site region 88070	82 bp upstream
Tssr88071	transcription start site region 88071	555 bp downstream