rs6398812 SNP Detail

Summary

• ID
  rs6398812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124220698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACATGGTTGC
  AACGTGTTGT GTGAGGTGCC TGCCTGTCTA CCGAGTGGAA ACTGGCTGAA GGTCAGCTGG
  GGACAGCCAA CGTGACAGCG CATGTGCCCA CCACAGCCAG ATTCCAAACT TCTCTCTGCT
  AGGCCTCACT GGCAGAGTGG GTAAACACCC TCACACCCAC CTCAGACACA GCCTCCTGAG
  CTCAGAGAGA GAAACGCATA GCAGCGTTTC TCATACACTG TGGAATGCTG GACTAGAAGA
  Y
  GCCTTGCNAC AGCCACGGGG CGACGACTAC AGGAGGGAAA TGGTCCCTGC ATGGGATGGG
  TGGGACAGGT GTGGCCTGGC CCAGTGCTTG GGACCATGGC GGGCATGCTG TTTCTCTCCC
  TGCTAGATCT TCCCATCCAT CATTCAGTCC ACAGGAANTG GACCTCTGCA GGCCTCCCTC
  TCAGGCAGCA CTAGACAAGA GGAGGCCCTG GTCACTGCCG AGAGCTCAAG AGGNCTGGCC
  AGGGTTCTGT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805002	WI_WGS_5_122183404	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398812					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124220698 () rs orientation: forward

Symbol	Name	Function Class
Abcb9	ATP-binding cassette, sub-family B member 9	within coordinates
Rr109253	regulatory region 109253	698 bp distal
Rr109254	regulatory region 109254	within coordinates
Rr109255	regulatory region 109255	1703 bp proximal
Tssr53310	transcription start site region 53310	462 bp downstream
Tssr53311	transcription start site region 53311	828 bp downstream