rs6398829 SNP Detail

Summary

• ID
  rs6398829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124220706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCAGCT GGGGACAGCC
  AACGTGACAG CGCATGTGCC CACCACAGCC AGATTCCAAA CTTCTCTCTG CTAGGCCTCA
  CTGGCAGAGT GGGTAAACAC CCTCACACCC ACCTCAGACA CAGCCTCCTG AGCTCAGAGA
  GAGAAACGCA TAGCAGCGTT TCTCATACAC TGTGGAATGC TGGACTAGAA GACGCCTTGC
  R
  ACAGCCACGG GGCGACGACT ACAGGAGGGA AATGGTCCCT GCATGGGATG GGTGGGACAG
  GTGTGGCCTG GCCCAGTGCT TGGGACCATG GCGGGCATGC TGTTTCTCTC CCTGCTAGAT
  CTTCCCATCC ATCATTCAGT CCACAGGAAC TGGACCTCTG CAGGCCTCCC TCTCAGGCAG
  CACTAGACAA GAGGAGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805019	WI_WGS_5_122183412	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398829					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124220706 () rs orientation: forward

Symbol	Name	Function Class
Abcb9	ATP-binding cassette, sub-family B member 9	within coordinates
Rr109253	regulatory region 109253	706 bp distal
Rr109254	regulatory region 109254	within coordinates
Rr109255	regulatory region 109255	1695 bp proximal
Tssr53310	transcription start site region 53310	454 bp downstream
Tssr53311	transcription start site region 53311	820 bp downstream