rs6398854 SNP Detail

Summary

• ID
  rs6398854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117040835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAACCT TAGCTAAGCA
  GCATGTTTGA GGCCAGAGTG GGCTGTGTGA AACTGTCTCA AACAAACAAA CAAACAAACA
  AAAAAAGATG CTGGCAATGA AAAGCAGCCT ACAATGCCTA AATGCTGGAA TTAGCATGAA
  TCACCATACC TGATTTTTGT CATTATTTAT AATGTCTTTT TGTTTCGTAG TACTAGGTAT
  Y
  AACTCCAGGA CTTTGTGCAT GTGCCACTAC TGTCCGGCTT CTAGGGGAAC GTTCTTACAC
  TGAACCACAT CATTACTGCC CCAGTATGCA GACCTATGCA GACCAAGAAC CCCCACCGCC
  CCGCGGAGGA TATGTATAGT GTAAATGGTG TCTAGCCCTT GGTCTATCCA ACCTTGACAA
  GCCTGAAGAC CTGAGTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805044	WI_WGS_4_114945900	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398854					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117040835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	711 bp distal
Kif2c	kinesin family member 2C	1014 bp upstream
Rr398412	regulatory region 398412	831 bp downstream
Rr598074	regulatory region 598074	1010 bp distal
Rr598075	regulatory region 598075	509 bp distal
Tssr42965	transcription start site region 42965	1035 bp upstream
Tssr42966	transcription start site region 42966	1002 bp upstream
Tssr42967	transcription start site region 42967	687 bp upstream