rs6398857 SNP Detail

Summary

• ID
  rs6398857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117040842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCG TAGTACTAGG TATTAACTCC
  R
  GGACTTTGTG CATGTGCCAC TACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8805047	WI_WGS_4_114945907	WI	MOUSE	f	SNP							A		G
ss37693184	NES09220946	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G		G	G	G		G	G	G	G		G
ss321278954	CHEV_4_116856250	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6398857					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693184	NES09220946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117040842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	718 bp distal
Kif2c	kinesin family member 2C	1021 bp upstream
Rr398412	regulatory region 398412	838 bp downstream
Rr598074	regulatory region 598074	1017 bp distal
Rr598075	regulatory region 598075	516 bp distal
Tssr42965	transcription start site region 42965	1042 bp upstream
Tssr42966	transcription start site region 42966	1009 bp upstream
Tssr42967	transcription start site region 42967	694 bp upstream