rs6398866 SNP Detail

Summary

• ID
  rs6398866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22817538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATGAGC TACTGACATT
  GACACTGACC CCTGCCACTG CGTTAGCCAC AGATGCAGAC ATGGCCCTCA GCAGTAGCTC
  AGGCTGGGAC TTCACAATGG CCCCAGGTGG CAGGGCTGGC TACTCACAAC AGGCTACTCC
  TCTCCACCCT CGAGTCTCCA GTTCCATCTC TCTTCACACT GCTCAAGCTG CTCCTCTTCT
  Y
  TCTCCCATCT GATAACCACA CACTCGCACG TTGTGATTGC TCCCACTGGA GCCTGCACAC
  AGCACTGGCG GACCCTTGGG TGACATTCTC CAGGAAGCAG TTGTCTATGG TCTGCCTGTG
  CCAGGGGCTC GAGGGCAGGT CTGTAGGTGG CATAGCAGTC CAGCAGGTCT CTGTTTTCCT
  CTATCCATGA TCTGCTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805056	WI_WGS_9_22984253	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398866					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22817538 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	450 bp upstream