rs6398897 SNP Detail

Summary

• ID
  rs6398897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22817563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCCTGC CACTGCGTTA
  GCCACAGATG CAGACATGGC CCTCAGCAGT AGCTCAGGCT GGGACTTCAC AATGGCCCCA
  GGTGGCAGGG CTGGCTACTC ACAACAGGCT ACTCCTCTCC ACCCTCGAGT CTCCAGTTCC
  ATCTCTCTTC ACACTGCTCA AGCTGCTCCT CTTCTTTCTC CCATCTGATA ACCACACACT
  Y
  GCACGTTGTG ATTGCTCCCA CTGGAGCCTG CACACAGCAC TGGCGGACCC TTGGGTGACA
  TTCTCCAGGA AGCAGTTGTC TATGGTCTGC CTGTGCCAGG GGCTCGAGGG CAGGTCTGTA
  GGTGGCATAG CAGTCCAGCA GGTCTCTGTT TTCCTCTATC CATGATCTGC TATGTGGTGG
  TAGGCAGGGC TATATGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805087	WI_WGS_9_22984278	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398897					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22817563 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	425 bp upstream