rs6398999 SNP Detail

Summary

• ID
  rs6398999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:56680674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AACCaataaa
  aaaaattaaa aaaaaaaaaa GAAAATGCAT ATCTTCAATG TACCCTACTT GTAGTTGAAT
  ATTTTGCTTC ATTAGTAAAG CATCACTTAA AGGTATTAAG TGACAATACC TCAAACACAA
  AAAGTGACAT TATAATACAG ATATACTTTA TCAGGTCTTT CTCAGTATTT GAAATCTGTA
  GTTTCCAACT CTATAAATTG ACCCCCAACC CTGTGTATTA TCTAATCTCC TCATAACTGG
  R
  ATAAATATTT GACAAAAAGC AATgtgtatt ttggcttact ctttgaaant acactccacc
  atagcatgga gggacagcag caggaacgac agccagtgtg tttgggtaag aagcataacg
  acatgaaggc tggtattccg cttgcttttt tctttttact ctatatagaa tcagtccatg
  aaatagtgca gcccacaatg accaggtctt cccattccaa AGGTCAGTTG AAATGCATAA
  AAACTAGAAA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805189	WI_WGS_8_55249942	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6398999					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:56680674 () rs orientation: forward

Symbol	Name	Function Class
Tssr81315	transcription start site region 81315	1516 bp downstream