rs6399231 SNP Detail

Summary

• ID
  rs6399231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGGAA GCTTCCTGGG
  AGTCCAGCCA CCAACATTAC TTCTATTTCT TCCATATGGC CAAGCATCCC ATCTGGTATT
  CAAGCTGCTT ACGAAATTGA AAGCAGAAAT CAACTTTTCC TTTTTAAAGG TAATTATAAT
  ACTTGGTTCT GCCCCTGAGA ATCATTTAAG GAAAAAAATA AGTGAAGGAA TTTGTACCAC
  Y
  TTTTATAAAT GAAGACTAAA AACAGTGCTC TAGACTTTTG TAACAATGGC TCTGAGATGT
  AAGTTAATTG TACAAGCCCA ACTCTACAGG AAATGCACAC CTTTAAGAAA GGTATATGAA
  CTATAAAATA ATAGCACTTA AAAAAACCTG CAGAGCCACA GGAAGTAAAG CAATGGTTGA
  GAACGGAAAC AGTGTGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805421	WI_WGS_9_7329613	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399231					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354927 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1381 bp downstream
Tssr83718	transcription start site region 83718	1975 bp downstream
Tssr83719	transcription start site region 83719	1942 bp downstream
Tssr83720	transcription start site region 83720	1909 bp downstream
Tssr83721	transcription start site region 83721	1678 bp downstream
Tssr83722	transcription start site region 83722	1397 bp downstream
Tssr83723	transcription start site region 83723	1350 bp downstream
Tssr83724	transcription start site region 83724	1031 bp downstream
Tssr83725	transcription start site region 83725	894 bp downstream
Tssr83726	transcription start site region 83726	799 bp downstream
Tssr83727	transcription start site region 83727	129 bp downstream
Tssr83728	transcription start site region 83728	104 bp downstream
Tssr83729	transcription start site region 83729	95 bp downstream
Tssr83730	transcription start site region 83730	377 bp upstream
Tssr83731	transcription start site region 83731	391 bp upstream
Tssr83732	transcription start site region 83732	432 bp upstream
Tssr83733	transcription start site region 83733	469 bp upstream
Tssr83734	transcription start site region 83734	897 bp upstream
Tssr83735	transcription start site region 83735	919 bp upstream
Tssr88067	transcription start site region 88067	1914 bp upstream
Tssr88068	transcription start site region 88068	1868 bp upstream
Tssr88069	transcription start site region 88069	1422 bp upstream
Tssr88070	transcription start site region 88070	149 bp upstream
Tssr88071	transcription start site region 88071	488 bp downstream