rs6399275 SNP Detail

Summary

• ID
  rs6399275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCAACA TTACTTCTAT
  TTCTTCCATA TGGCCAAGCA TCCCATCTGG TATTCAAGCT GCTTACGAAA TTGAAAGCAG
  AAATCAACTT TTCCTTTTTA AAGGTAATTA TAATACTTGG TTCTGCCCCT GAGAATCATT
  TAAGGAAAAA AATAAGTGAA GGAATTTGTA CCACTTTTTA TAAATGAAGA CTAAAAACAG
  Y
  GCTCTAGACT TTTGTAACAA TGGCTCTGAG ATGTAAGTTA ATTGTACAAG CCCAACTCTA
  CAGGAAATGC ACACCTTTAA GAAAGGTATA TGAACTATAA AATAATAGCA CTTAAAAAAA
  CCTGCAGAGC CACAGGAAGT AAAGCAATGG TTGAGAACGG AAACAGTGTG GGGTGACATG
  ACTCAGTGAC AGAGACCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805465	WI_WGS_9_7329639	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399275					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354953 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1407 bp downstream
Tssr83719	transcription start site region 83719	1968 bp downstream
Tssr83720	transcription start site region 83720	1935 bp downstream
Tssr83721	transcription start site region 83721	1704 bp downstream
Tssr83722	transcription start site region 83722	1423 bp downstream
Tssr83723	transcription start site region 83723	1376 bp downstream
Tssr83724	transcription start site region 83724	1057 bp downstream
Tssr83725	transcription start site region 83725	920 bp downstream
Tssr83726	transcription start site region 83726	825 bp downstream
Tssr83727	transcription start site region 83727	155 bp downstream
Tssr83728	transcription start site region 83728	130 bp downstream
Tssr83729	transcription start site region 83729	121 bp downstream
Tssr83730	transcription start site region 83730	351 bp upstream
Tssr83731	transcription start site region 83731	365 bp upstream
Tssr83732	transcription start site region 83732	406 bp upstream
Tssr83733	transcription start site region 83733	443 bp upstream
Tssr83734	transcription start site region 83734	871 bp upstream
Tssr83735	transcription start site region 83735	893 bp upstream
Tssr88067	transcription start site region 88067	1940 bp upstream
Tssr88068	transcription start site region 88068	1894 bp upstream
Tssr88069	transcription start site region 88069	1448 bp upstream
Tssr88070	transcription start site region 88070	175 bp upstream
Tssr88071	transcription start site region 88071	462 bp downstream