rs6399355 SNP Detail

Summary

• ID
  rs6399355
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTACGA AATTGAAAGC
  AGAAATCAAC TTTTCCTTTT TAAAGGTAAT TATAATACTT GGTTCTGCCC CTGAGAATCA
  TTTAAGGAAA AAAATAAGTG AAGGAATTTG TACCACTTTT TATAAATGAA GACTAAAAAC
  AGTGCTCTAG ACTTTTGTAA CAATGGCTCT GAGATGTAAG TTAATTGTAC AAGCCCAACT
  S
  TACAGGAAAT GCACACCTTT AAGAAAGGTA TATGAACTAT AAAATAATAG CACTTAAAAA
  AACCTGCAGA GCCACAGGAA GTAAAGCAAT GGTTGAGAAC GGAAACAGTG TGGGGTGACA
  TGACTCAGTG ACAGAGACCC TACTTTCCAT GGATGAAGCC TTGGGTTTTC CTCCAACACC
  CAGTACAAAT AAAGTAAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805546	WI_WGS_9_7329697	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399355					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355011 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1465 bp downstream
Tssr83720	transcription start site region 83720	1993 bp downstream
Tssr83721	transcription start site region 83721	1762 bp downstream
Tssr83722	transcription start site region 83722	1481 bp downstream
Tssr83723	transcription start site region 83723	1434 bp downstream
Tssr83724	transcription start site region 83724	1115 bp downstream
Tssr83725	transcription start site region 83725	978 bp downstream
Tssr83726	transcription start site region 83726	883 bp downstream
Tssr83727	transcription start site region 83727	213 bp downstream
Tssr83728	transcription start site region 83728	188 bp downstream
Tssr83729	transcription start site region 83729	179 bp downstream
Tssr83730	transcription start site region 83730	293 bp upstream
Tssr83731	transcription start site region 83731	307 bp upstream
Tssr83732	transcription start site region 83732	348 bp upstream
Tssr83733	transcription start site region 83733	385 bp upstream
Tssr83734	transcription start site region 83734	813 bp upstream
Tssr83735	transcription start site region 83735	835 bp upstream
Tssr88067	transcription start site region 88067	1998 bp upstream
Tssr88068	transcription start site region 88068	1952 bp upstream
Tssr88069	transcription start site region 88069	1506 bp upstream
Tssr88070	transcription start site region 88070	233 bp upstream
Tssr88071	transcription start site region 88071	404 bp downstream