rs6399462 SNP Detail

Summary

• ID
  rs6399462
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124220856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGCGTT TCTCATACAC
  TGTGGAATGC TGGACTAGAA GACGCCTTGC GACAGCCACG GGGCGACGAC TACAGGAGGG
  AAATGGTCCC TGCATGGGAT GGGTGGGACA GGTGTGGCCT GGCCCAGTGC TTGGGACCAT
  GGCGGGCATG CTGTTTCTCT CCCTGCTAGA TCTTCCCATC CATCATTCAG TCCACAGGAA
  S
  TGGACCTCTG CAGGCCTCCC TCTCAGGCAG CACTAGACAA GAGGAGGCCC TGGTCACTGC
  CGAGAGCTCA AGAGGCCTGG CCAGGGTTCT GTGGTGGCCC CAACTCACAC CAAAAACGTC
  ACCAGTCAGC TTAGTATCCC AGGGCTCCAC CTGGAACTAG ACCATAGGAA GTGCTGGTGG
  GGCAAGCCAT GCTGCTGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8805653	WI_WGS_5_122183562	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399462					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124220856 () rs orientation: forward

Symbol	Name	Function Class
Abcb9	ATP-binding cassette, sub-family B member 9	within coordinates
Rr109253	regulatory region 109253	856 bp distal
Rr109254	regulatory region 109254	56 bp distal
Rr109255	regulatory region 109255	1545 bp proximal
Tssr53310	transcription start site region 53310	304 bp downstream
Tssr53311	transcription start site region 53311	670 bp downstream