rs6399706 SNP Detail

Summary

• ID
  rs6399706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40058445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GAGGTAATTA GTCTTATAAA
  R
  TTAGAAAAAA ACATATTTAT ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8805898	WI_WGS_8_38728478	WI	MOUSE	f	SNP			G	A
ss46219425	mCV24622203	ABI	CRAMUS_MOUSE	f	SNP	A	A	G		A
ss144619564	ENSMUSSNP1714890	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss322624423	CHEV_8_40690758	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6399706					SNP	A	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40058445 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	63 bp downstream
Tssr80996	transcription start site region 80996	822 bp upstream
Tssr80997	transcription start site region 80997	799 bp upstream
Tssr80998	transcription start site region 80998	386 bp upstream
Tssr80999	transcription start site region 80999	324 bp upstream
Tssr81000	transcription start site region 81000	140 bp upstream
Tssr81001	transcription start site region 81001	124 bp upstream
Tssr81002	transcription start site region 81002	98 bp upstream
Tssr81003	transcription start site region 81003	72 bp upstream
Tssr81004	transcription start site region 81004	20 bp upstream
Tssr81005	transcription start site region 81005	within coordinates
Tssr81006	transcription start site region 81006	25 bp downstream
Tssr81007	transcription start site region 81007	90 bp downstream
Tssr81008	transcription start site region 81008	200 bp downstream
Tssr81009	transcription start site region 81009	216 bp downstream
Tssr81010	transcription start site region 81010	243 bp downstream
Tssr81011	transcription start site region 81011	321 bp downstream
Tssr81012	transcription start site region 81012	346 bp downstream
Tssr81013	transcription start site region 81013	514 bp downstream
Tssr81014	transcription start site region 81014	541 bp downstream