rs6399839 SNP Detail

Summary

• ID
  rs6399839
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCCTG AGAATCATTT
  AAGGAAAAAA ATAAGTGAAG GAATTTGTAC CACTTTTTAT AAATGAAGAC TAAAAACAGT
  GCTCTAGACT TTTGTAACAA TGGCTCTGAG ATGTAAGTTA ATTGTACAAG CCCAACTCTA
  CAGGAAATGC ACACCTTTAA GAAAGGTATA TGAACTATAA AATAATAGCA CTTAAAAAAA
  M
  CTGCAGAGCC ACAGGAAGTA AAGCAATGGT TGAGAACGGA AACAGTGTGG GGTGACATGA
  CTCAGTGACA GAGACCCTAC TTTCCATGGA TGAAGCCTTG GGTTTTCCTC CAACACCCAG
  TACAAATAAA GTAAACTCAA TTTTAGAACT CTGCTCAAGA GAGATATTTT ATGGTATGTC
  AATGCTTTTA TTATCCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8806031	WI_WGS_9_7329760	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399839					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355074 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1528 bp downstream
Tssr83721	transcription start site region 83721	1825 bp downstream
Tssr83722	transcription start site region 83722	1544 bp downstream
Tssr83723	transcription start site region 83723	1497 bp downstream
Tssr83724	transcription start site region 83724	1178 bp downstream
Tssr83725	transcription start site region 83725	1041 bp downstream
Tssr83726	transcription start site region 83726	946 bp downstream
Tssr83727	transcription start site region 83727	276 bp downstream
Tssr83728	transcription start site region 83728	251 bp downstream
Tssr83729	transcription start site region 83729	242 bp downstream
Tssr83730	transcription start site region 83730	230 bp upstream
Tssr83731	transcription start site region 83731	244 bp upstream
Tssr83732	transcription start site region 83732	285 bp upstream
Tssr83733	transcription start site region 83733	322 bp upstream
Tssr83734	transcription start site region 83734	750 bp upstream
Tssr83735	transcription start site region 83735	772 bp upstream
Tssr88069	transcription start site region 88069	1569 bp upstream
Tssr88070	transcription start site region 88070	296 bp upstream
Tssr88071	transcription start site region 88071	341 bp downstream