rs6399874 SNP Detail

Summary

• ID
  rs6399874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTGAA GGAATTTGTA
  CCACTTTTTA TAAATGAAGA CTAAAAACAG TGCTCTAGAC TTTTGTAACA ATGGCTCTGA
  GATGTAAGTT AATTGTACAA GCCCAACTCT ACAGGAAATG CACACCTTTA AGAAAGGTAT
  ATGAACTATA AAATAATAGC ACTTAAAAAA ACCTGCAGAG CCACAGGAAG TAAAGCAATG
  R
  TTGAGAACGG AAACAGTGTG GGGTGACATG ACTCAGTGAC AGAGACCCTA CTTTCCATGG
  ATGAAGCCTT GGGTTTTCCT CCAACACCCA GTACAAATAA AGTAAACTCA ATTTTAGAAC
  TCTGCTCAAG AGAGATATTT TATGGTATGT CAATGCTTTT ATTATCCTTT TGGGGTGACT
  GTTATACCCT TTCTGTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8806066	WI_WGS_9_7329789	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399874					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355103 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1557 bp downstream
Tssr83721	transcription start site region 83721	1854 bp downstream
Tssr83722	transcription start site region 83722	1573 bp downstream
Tssr83723	transcription start site region 83723	1526 bp downstream
Tssr83724	transcription start site region 83724	1207 bp downstream
Tssr83725	transcription start site region 83725	1070 bp downstream
Tssr83726	transcription start site region 83726	975 bp downstream
Tssr83727	transcription start site region 83727	305 bp downstream
Tssr83728	transcription start site region 83728	280 bp downstream
Tssr83729	transcription start site region 83729	271 bp downstream
Tssr83730	transcription start site region 83730	201 bp upstream
Tssr83731	transcription start site region 83731	215 bp upstream
Tssr83732	transcription start site region 83732	256 bp upstream
Tssr83733	transcription start site region 83733	293 bp upstream
Tssr83734	transcription start site region 83734	721 bp upstream
Tssr83735	transcription start site region 83735	743 bp upstream
Tssr88069	transcription start site region 88069	1598 bp upstream
Tssr88070	transcription start site region 88070	325 bp upstream
Tssr88071	transcription start site region 88071	312 bp downstream