rs6399889 SNP Detail

Summary

• ID
  rs6399889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATTTGT ACCACTTTTT
  ATAAATGAAG ACTAAAAACA GTGCTCTAGA CTTTTGTAAC AATGGCTCTG AGATGTAAGT
  TAATTGTACA AGCCCAACTC TACAGGAAAT GCACACCTTT AAGAAAGGTA TATGAACTAT
  AAAATAATAG CACTTAAAAA AACCTGCAGA GCCACAGGAA GTAAAGCAAT GGTTGAGAAC
  R
  GAAACAGTGT GGGGTGACAT GACTCAGTGA CAGAGACCCT ACTTTCCATG GATGAAGCCT
  TGGGTTTTCC TCCAACACCC AGTACAAATA AAGTAAACTC AATTTTAGAA CTCTGCTCAA
  GAGAGATATT TTATGGTATG TCAATGCTTT TATTATCCTT TTGGGGTGAC TGTTATACCC
  TTTCTGTTTG TCCTCATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8806081	WI_WGS_9_7329798	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6399889					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355112 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1566 bp downstream
Tssr83721	transcription start site region 83721	1863 bp downstream
Tssr83722	transcription start site region 83722	1582 bp downstream
Tssr83723	transcription start site region 83723	1535 bp downstream
Tssr83724	transcription start site region 83724	1216 bp downstream
Tssr83725	transcription start site region 83725	1079 bp downstream
Tssr83726	transcription start site region 83726	984 bp downstream
Tssr83727	transcription start site region 83727	314 bp downstream
Tssr83728	transcription start site region 83728	289 bp downstream
Tssr83729	transcription start site region 83729	280 bp downstream
Tssr83730	transcription start site region 83730	192 bp upstream
Tssr83731	transcription start site region 83731	206 bp upstream
Tssr83732	transcription start site region 83732	247 bp upstream
Tssr83733	transcription start site region 83733	284 bp upstream
Tssr83734	transcription start site region 83734	712 bp upstream
Tssr83735	transcription start site region 83735	734 bp upstream
Tssr88069	transcription start site region 88069	1607 bp upstream
Tssr88070	transcription start site region 88070	334 bp upstream
Tssr88071	transcription start site region 88071	303 bp downstream