rs6400233 SNP Detail

Summary

• ID
  rs6400233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40058546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAATAGAGCT
  ATTTTTAATA TATTAGACTA CTAAAGTTAA TTATCTCCTT TCAATATTTG TATAGCCCTA
  TTCTTTTCCT GGGACAGTGT TCTCTGGTTT GTTTATAACT GATGTATTTG TATCTCCTAG
  AGGTAATTAG TCTTATAAAN TTAGAAAAAA ACATATTTAT ACCTGTTAAG TCTTTCTCCA
  ATTGGTACAC aatgaatgaa tttatgttaa atgaattagt gaatgaatgg atggaCAGAC
  Y
  CCTATTTCAA TCTCTATTTG TATTTGAGGA AAATATCTTA CATTTCAAGA ACTAATACTT
  AATCAATATC AATTAAGTTT TTCTTAGAAT TTAATAGGAT TCTGCACAGT TAGGTGAGGG
  GAACAGCAGA AGGTCTGAAG AAGGCAGGAA CATCCCTCTA CTCAACAGGT AGANCATCTA
  GGTAAAAGGT GCCAGGGGAT GGGAGTCATT GTAGCAGAGC ATATGCCATA AGGTACTTAT
  GTCAATGGAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8806425	WI_WGS_8_38728579	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6400233					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40058546 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	31 bp upstream
Tssr80996	transcription start site region 80996	923 bp upstream
Tssr80997	transcription start site region 80997	900 bp upstream
Tssr80998	transcription start site region 80998	487 bp upstream
Tssr80999	transcription start site region 80999	425 bp upstream
Tssr81000	transcription start site region 81000	241 bp upstream
Tssr81001	transcription start site region 81001	225 bp upstream
Tssr81002	transcription start site region 81002	199 bp upstream
Tssr81003	transcription start site region 81003	173 bp upstream
Tssr81004	transcription start site region 81004	121 bp upstream
Tssr81005	transcription start site region 81005	96 bp upstream
Tssr81006	transcription start site region 81006	59 bp upstream
Tssr81007	transcription start site region 81007	within coordinates
Tssr81008	transcription start site region 81008	99 bp downstream
Tssr81009	transcription start site region 81009	115 bp downstream
Tssr81010	transcription start site region 81010	142 bp downstream
Tssr81011	transcription start site region 81011	220 bp downstream
Tssr81012	transcription start site region 81012	245 bp downstream
Tssr81013	transcription start site region 81013	413 bp downstream
Tssr81014	transcription start site region 81014	440 bp downstream