rs6400640 SNP Detail

Summary

• ID
  rs6400640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118456132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATATTTAT GGAATAGTTC CAGGTCAGTA AATGTTTCGT
  GAATGGAAAC AGTGAATTTG TCAGTGTATA GAGGGAAAAA TGGTGACTTG GAAGAAGTGG
  Y
  GAGTTCAGAG GAAGAAGAGA AGAGTCAGTC AGTCCTCCCA GACCACAGGG CTTGCATTAC
  TCCTTCCCTG TAACCTTTGC TTTAGAGAAA AGGTTTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8806833	WI_WGS_7_108499511	WI	MOUSE	f	SNP		T	C
ss46143758	mCV23653862	ABI	CRAMUS_MOUSE	f	SNP	C	T		C
ss145794259	ENSMUSSNP5779621	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6400640					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118456132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	530 bp distal
Iqck	IQ motif containing K	within coordinates
Knop1	lysine rich nucleolar protein 1	1225 bp upstream
Rr654563	regulatory region 654563	1307 bp distal
Rr654564	regulatory region 654564	1124 bp distal
Rr654565	regulatory region 654565	421 bp distal
Tssr68731	transcription start site region 68731	1111 bp downstream
Tssr74457	transcription start site region 74457	1214 bp upstream
Tssr74458	transcription start site region 74458	949 bp upstream
Tssr74459	transcription start site region 74459	928 bp upstream
Tssr74460	transcription start site region 74460	895 bp upstream
Tssr74461	transcription start site region 74461	889 bp upstream
Tssr74462	transcription start site region 74462	869 bp upstream
Tssr74463	transcription start site region 74463	536 bp upstream