rs6401041 SNP Detail

Summary

• ID
  rs6401041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71735429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGAAATT CACTCACAGC
  CAAGGAAGTC TAGCAGAACC ATGGCAAATG CTGTTTTGAT GGCTCACTTG GGCTCATGGT
  CAGCTAACTT CCTTATACCA CCTAGTACCA CCTGCCCAGG GATTGGCGCT GCCCACAGTG
  GGCAGATCCC TCCCATATCA ATTAACAATC AAGACAGTCT CTCATAGGCA TGGCCACAGG
  Y
  CAATTTGATC TAGGGAATTA TTTTTCTTTT TTTCTTTCTT TTTTATTCTT CTCTCATATA
  TTACACCCTG CCTGCAGTTT CTCTCCCCCC CCCCCCACCC ACCTTCCCCT TTCTCCATGA
  TCAACCCCCT TCCACCTCCC CTCAGAAAAG ACCAGGCAGG CCTCCCAGGG ACATCAACCA
  AACACTGGAT AACAAGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8807237	WI_WGS_6_72635336	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6401041					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71735429 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	962 bp downstream
Rr368099	regulatory region 368099	600 bp downstream
Rr631995	regulatory region 631995	495 bp distal
Rr631996	regulatory region 631996	1309 bp distal
Rr631997	regulatory region 631997	387 bp proximal