rs6401077 SNP Detail

Summary

• ID
  rs6401077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71735450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGTCT AGCAGAACCA
  TGGCAAATGC TGTTTTGATG GCTCACTTGG GCTCATGGTC AGCTAACTTC CTTATACCAC
  CTAGTACCAC CTGCCCAGGG ATTGGCGCTG CCCACAGTGG GCAGATCCCT CCCATATCAA
  TTAACAATCA AGACAGTCTC TCATAGGCAT GGCCACAGGT CAATTTGATC TAGGGAATTA
  Y
  TTTTCTTTTT TTCTTTCTTT TTTATTCTTC TCTCATATAT TACACCCTGC CTGCAGTTTC
  TCTCCCCCCC CCCCCACCCA CCTTCCCCTT TCTCCATGAT CAACCCCCTT CCACCTCCCC
  TCAGAAAAGA CCAGGCAGGC CTCCCAGGGA CATCAACCAA ACACTGGATA ACAAGCTACA
  GTAAGACCCA GCAACAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8807273	WI_WGS_6_72635357	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6401077					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71735450 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	983 bp downstream
Rr368099	regulatory region 368099	621 bp downstream
Rr631995	regulatory region 631995	516 bp distal
Rr631996	regulatory region 631996	1330 bp distal
Rr631997	regulatory region 631997	366 bp proximal