rs6401211 SNP Detail

Summary

• ID
  rs6401211
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG TCGATCAGAA AGCTGGTGTG
  M
  TTACTGACTT TTTCTTTAAG CACTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8807407	WI_WGS_2_71839323	WI	MOUSE	f	SNP								C		A
ss38125082	NES09278479	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	C	A		A		C	A	A		A	A	A	A		C
ss146738265	ENSMUSSNP5807076	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A								C
ss320335124	CHEV_2_70892911	CHEVERUD	SCREENING_POP	f	SNP														A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6401211					SNP	C	C	A	A	C	C	A	C	A	A	C	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125082	NES09278479	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885198 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			493 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			474 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			659 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			708 bp proximal
Rr558664	regulatory region 558664			883 bp proximal
Rr558665	regulatory region 558665			1410 bp proximal
Tssr18237	transcription start site region 18237			877 bp upstream
Tssr24467	transcription start site region 24467			650 bp downstream
Tssr24468	transcription start site region 24468			662 bp downstream
Tssr24469	transcription start site region 24469			680 bp downstream