rs6401552 SNP Detail

Summary

• ID
  rs6401552
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71735522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAGGTCA ATTTGATCTA GGGAATTATT TTTCTTTTTT
  TCTTTCTTTT TTATTCTTCT CTCATATATT ACACCCTGCC TGCAGTTTCT CTCCCCCCCC
  M
  CCCACCCACC TTCCCCTTTC TCCATGATCA ACCCCCTTCC ACCTCCCCTC AGAAAAGACC
  AGGCAGGCCT CCCAGGGACA TCAACCAAAC ACTGGATAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8807749	WI_WGS_6_72635429	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6401552					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71735522 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	1055 bp downstream
Rr368099	regulatory region 368099	693 bp downstream
Rr631995	regulatory region 631995	588 bp distal
Rr631996	regulatory region 631996	1402 bp distal
Rr631997	regulatory region 631997	294 bp proximal