rs6401555 SNP Detail

Summary

• ID
  rs6401555
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA AATTCCAGTT CCTTAGAAAA
  W
  TTTTAGTATT AATATAAGCA CCAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss8807752	WI_WGS_12_20508356	WI	MOUSE	f	SNP				T			A
ss38881162	mCV24521357	ABI	CRAMUS_MOUSE	f	SNP	T	T					A		A
ss52328581	NES15372044	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T		A	A	A	T	A
ss137438997	ENSMUSSNP286935	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs6401555					SNP	T	T	A	T	T	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328581	NES15372044	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494089 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	32 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	mRNA-UTR
Tssr112998	transcription start site region 112998	337 bp downstream
Tssr112999	transcription start site region 112999	272 bp downstream
Tssr113000	transcription start site region 113000	171 bp downstream
Tssr113001	transcription start site region 113001	296 bp upstream
Tssr113002	transcription start site region 113002	320 bp upstream
Tssr113003	transcription start site region 113003	395 bp upstream
Tssr113004	transcription start site region 113004	455 bp upstream
Tssr113005	transcription start site region 113005	481 bp upstream
Tssr113006	transcription start site region 113006	844 bp upstream
Tssr113007	transcription start site region 113007	928 bp upstream
Tssr113008	transcription start site region 113008	1096 bp upstream
Tssr113009	transcription start site region 113009	1114 bp upstream
Tssr113010	transcription start site region 113010	1264 bp upstream
Tssr115902	transcription start site region 115902	1220 bp upstream
Tssr115903	transcription start site region 115903	890 bp upstream
Tssr115904	transcription start site region 115904	866 bp upstream
Tssr115905	transcription start site region 115905	568 bp upstream
Tssr115906	transcription start site region 115906	448 bp upstream
Tssr115907	transcription start site region 115907	389 bp upstream
Tssr115908	transcription start site region 115908	345 bp upstream
Tssr115909	transcription start site region 115909	261 bp upstream
Tssr115910	transcription start site region 115910	207 bp upstream
Tssr115911	transcription start site region 115911	159 bp upstream
Tssr115912	transcription start site region 115912	145 bp upstream
Tssr115913	transcription start site region 115913	110 bp upstream
Tssr115914	transcription start site region 115914	62 bp upstream
Tssr115915	transcription start site region 115915	19 bp upstream
Tssr115916	transcription start site region 115916	19 bp downstream
Tssr115917	transcription start site region 115917	65 bp downstream
Tssr115918	transcription start site region 115918	84 bp downstream
Tssr115919	transcription start site region 115919	111 bp downstream
Tssr115920	transcription start site region 115920	138 bp downstream
Tssr115921	transcription start site region 115921	443 bp downstream
Tssr115922	transcription start site region 115922	539 bp downstream
Tssr115923	transcription start site region 115923	622 bp downstream
Tssr115924	transcription start site region 115924	693 bp downstream
Tssr115925	transcription start site region 115925	708 bp downstream
Tssr115926	transcription start site region 115926	1057 bp downstream
Tssr115927	transcription start site region 115927	1101 bp downstream