rs6401597 SNP Detail

Summary

• ID
  rs6401597
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71735552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGCTGCC CACAGTGGGC
  AGATCCCTCC CATATCAATT AACAATCAAG ACAGTCTCTC ATAGGCATGG CCACAGGTCA
  ATTTGATCTA GGGAATTATT TTTCTTTTTT TCTTTCTTTT TTATTCTTCT CTCATATATT
  ACACCCTGCC TGCAGTTTCT CTCCCCCCCC CCCCACCCAC CTTCCCCTTT CTCCATGATC
  M
  ACCCCCTTCC ACCTCCCCTC AGAAAAGACC AGGCAGGCCT CCCAGGGACA TCAACCAAAC
  ACTGGATAAC AAGCTACAGT AAGACCCAGC AACAGTGAGG CCCGGCATGT ACCATCATCA
  AGGCTGGACA AGGCAACCCA GCAGGAGGAA AGGAGTTGAC AAAAGAGTCA GGAACAGCCC
  CTGCTCCCAA TGTTAAGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8807794	WI_WGS_6_72635459	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6401597					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71735552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr368098	regulatory region 368098			1085 bp downstream
Rr368099	regulatory region 368099			723 bp downstream
Rr631995	regulatory region 631995			618 bp distal
Rr631996	regulatory region 631996			1432 bp distal
Rr631997	regulatory region 631997			264 bp proximal