rs6402061 SNP Detail

Summary

• ID
  rs6402061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:35202022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG TGGGTTCATG TGTGCCCACC
  R
  TGGTCTGCAG AGAGAGCACA TAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8808259	WI_WGS_5_33752209	WI	MOUSE	f	SNP			G	A
ss45828905	mCV24464909	ABI	CRAMUS_MOUSE	f	SNP	G	A			G
ss148220985	ENSMUSSNP6726189	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6402061					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35202022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hgfac	hepatocyte growth factor activator			Intron
				Noncoding-Transcript-Variant
Rr609835	regulatory region 609835			1521 bp distal
Rr609836	regulatory region 609836			1440 bp distal
Tssr45928	transcription start site region 45928			585 bp upstream
Tssr45929	transcription start site region 45929			597 bp upstream
Tssr45930	transcription start site region 45930			1805 bp upstream