rs6402309 SNP Detail

Summary

• ID
  rs6402309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118456461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTACAGTTT ATTGTATAGT TTGATACTTT TCTTATTGCT
  GTGAAAAATA TCTGACAAAA GCAACTCAGA GACTTATTTG GGCTCACAGT TTGAGGATAT
  R
  GTACATCATC CCAGTGGGGG CTCCTGGCAG CCGGTCCCGT TTGCATCCAC AACTAAGAAA
  CAGAGATGGA TTCTGGGGCT CAACTCACTT CCTTCCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8808508	WI_WGS_7_108499840	WI	MOUSE	f	SNP			G	A
ss46085336	mCV23653874	ABI	CRAMUS_MOUSE	f	SNP			G		A
ss145794276	ENSMUSSNP5690657	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6402309					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118456461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	859 bp distal
Iqck	IQ motif containing K	within coordinates
Knop1	lysine rich nucleolar protein 1	1554 bp upstream
Rr654563	regulatory region 654563	1636 bp distal
Rr654564	regulatory region 654564	1453 bp distal
Rr654565	regulatory region 654565	750 bp distal
Tssr68731	transcription start site region 68731	1440 bp downstream
Tssr74457	transcription start site region 74457	1543 bp upstream
Tssr74458	transcription start site region 74458	1278 bp upstream
Tssr74459	transcription start site region 74459	1257 bp upstream
Tssr74460	transcription start site region 74460	1224 bp upstream
Tssr74461	transcription start site region 74461	1218 bp upstream
Tssr74462	transcription start site region 74462	1198 bp upstream
Tssr74463	transcription start site region 74463	865 bp upstream