rs6402365 SNP Detail

Summary

• ID
  rs6402365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA CCTGGATTAT CTTAGGCAGT
  Y
  CAATAAGAAT GCAAACATTT CATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8808564	WI_WGS_2_71839561	WI	MOUSE	f	SNP								T		C
ss38125078	NES09278487	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C		T	C	C		C	C	C	C		T
ss146738274	ENSMUSSNP6683524	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C								T
ss320335127	CHEV_2_70893149	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6402365					SNP	T	T	C	C	T	T	C	T	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125078	NES09278487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			255 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			236 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			421 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			470 bp proximal
Rr558664	regulatory region 558664			645 bp proximal
Rr558665	regulatory region 558665			1172 bp proximal
Tssr18237	transcription start site region 18237			639 bp upstream
Tssr24467	transcription start site region 24467			412 bp downstream
Tssr24468	transcription start site region 24468			424 bp downstream
Tssr24469	transcription start site region 24469			442 bp downstream