rs6402393 SNP Detail

Summary

• ID
  rs6402393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131914107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGGTC GTTTGACCTC
  CAAAGGAGTC ACAACCCAAG GGTTGAGAAA AGCTGCTCTA AGGAAATATA CATATGAGGG
  GTCCGGGTGG AGGGTGCCAT GCAATCTTAG GCCTCAGAGA TGTCTCTCCA TCTTCAGTCA
  TGAGTTCTAT AACCAAAAAA ATAAAATAAA AATAAAAAAA TACCACAAAA ACCCAGTGCT
  Y
  CCTGAATGCA TTGCCAGGCA TTGTTCCTGG CACCTGGAAG GGGCTTTGCT CTTTTATAGG
  ACACCTGGGT GACATCATCC CCAAAGCTCC AACCTCCAAG CTACTCACCA GTCTCCCACT
  GTACTTTCCC AAGGCCCCTC AAAGACGGCT GTCAGCAGCA TTATGTAATT CTGACTTGCA
  CAAGTTCTGC CTCGCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8808592	WI_WGS_7_122292380	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6402393					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131914107 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	within coordinates
Gm44891	predicted gene 44891	within coordinates
Gm71837	predicted gene, 71837	within coordinates
Rr656553	regulatory region 656553	14 bp proximal
Tssr75193	transcription start site region 75193	752 bp upstream