rs6402724 SNP Detail

Summary

• ID
  rs6402724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22818253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTATACA CAACAGTATG
  GAGTTTTCTC CAGACTAAAT AATTCATTAA CTATCCCACC ATCTACAGGA AGAAGAGCTG
  ATATTCTAGT CTAGTCAGTT TCCAAAAGCA CAGATGCACA CCCATATGTA AGTATATTAT
  TAAGGATACA AGAGGACATT TTAAAGCAAA ACCTTGTAGC ATGTGATGGC TGCTCTTTGA
  Y
  TTCCTGTGTT GTTTTAATGT GTTAGTTCTT TGGTGAACAC CATGTTTGTG TTCCTCCTTC
  CACTCTGTAG GAAGTGTGCT AGTAGTGGCC ATGATGACAC AGTACTCTCA CATGTCATAT
  TTCGTAGAAA TGCTATCAGC TTTCAGCTGC TCATGCTCGA TCTAGACATT GTTTTCAATT
  TTCCACGCCA CTTTTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8808925	WI_WGS_9_22984968	WI	MOUSE	f	SNP							C		T
ss51995532	NES15013725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6402724					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51995532	NES15013725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22818253 () rs orientation: forward

Symbol	Name	Function Class
Rr383073	regulatory region 383073	within coordinates