rs6402844 SNP Detail

Summary

• ID
  rs6402844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTAAAGG GGTTTACAAT
  GAGGTTACGG GTCGCATTTG GTATACAGTT ACGGAAATTT TTAGTATGTT AGTAATTTTG
  AACACGCAGG CTGAGCTAGT TCACAGAGAA TGTTATTTTT TACTTAGAGA AGTCAACCTG
  GATTATCTTA GGCAGTTCAA TAAGAATGCA AACATTTCAT ATTTTATTCC CTATAAGGGG
  R
  AAAAATGGAA GGAGGAAGAA AACACAGCAA TTACCACAAA ACCAGTCAGG GTCCCCGCTG
  GCCACACAAG GACGAGCCTT TGGGAAGGAG AAATTCAATC CTACTTTGAT GGGAAAAACA
  GCAACTTTCA CCACTAATTA CCATACAAAA GCATAGTGGT TACACAACTA AATGTTGAAG
  TCAACCTCAT CCACAACGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8809045	WI_WGS_2_71839605	WI	MOUSE	f	SNP			G	A
ss146738277	ENSMUSSNP2396606	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6402844					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			211 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			192 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			377 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			426 bp proximal
Rr558664	regulatory region 558664			601 bp proximal
Rr558665	regulatory region 558665			1128 bp proximal
Tssr18237	transcription start site region 18237			595 bp upstream
Tssr24467	transcription start site region 24467			368 bp downstream
Tssr24468	transcription start site region 24468			380 bp downstream
Tssr24469	transcription start site region 24469			398 bp downstream