rs6402940 SNP Detail

Summary

• ID
  rs6402940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131914190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACCCAAGGGT
  TGAGAAAAGC TGCTCTAAGG AAATATACAT ATGAGGGGTC CGGGTGGAGG GTGCCATGCA
  ATCTTAGGCC TCAGAGATGT CTCTCCATCT TCAGTCATGA GTTCTATAAC Caaaaaaata
  aaataaaaat aaaaaaataC CACAAAAACC CAGTGCTNCC TGAATGCATT GCCAGGCATT
  GTTCCTGGCA CCTGGAAGGG GCTTTGCTCT TTTATAGGAC ACCTGGGTGA CATCATCCCC
  R
  AAGCTCCAAC CTCCAAGCTA CTCACCAGNC TCCCACTGTA CTTTCCCAAG GCCCCTCAAA
  GACGGCTGTC AGCAGCATTA TGTAATTCTG ACTTGCACAA GTTCTGCCTC GCCCACTAAT
  CTCATCGCTG AGCAGGGACG GCGTGCTGAG AGCTGACTCT CTGCCCCCGT GCACCTGGCC
  CGGGGCCACA CCTAAAGGGA ACGCATAAAT ACTGTACAGA GCTACTGCAT ATGACAGAGA
  GGAGGCTCCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8809141	WI_WGS_7_122292463	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6402940					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131914190 () rs orientation: forward

Symbol	Name	Function Class
Chst15	carbohydrate sulfotransferase 15	within coordinates
Gm44891	predicted gene 44891	within coordinates
Gm71837	predicted gene, 71837	within coordinates
Tssr75193	transcription start site region 75193	835 bp upstream