rs6402953 SNP Detail

Summary

• ID
  rs6402953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108702816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTTTG TGTATGGGTG
  TTTTGCCTAC ATGTAAGGCT GTGCACCATG TGCATGCAGG GCCTGTGGAG GCCAGAGAAG
  GGTGCTGGAT CCTGTGGGAC AGGAGTTACG GATGGTTGTG GGTGCTGGGA TGAACCTGGG
  TCCTCTGGAA GATCAGTGTA TCCCTAAATC CTCAGTGATC AGTGGAGGAT GGAAGGGACA
  Y
  GCCTCAAGTG TCTGACAATG TCTGCCCAGA CAATTGGCTG ACTGCAACTA CACAGGCACA
  AACAACCACT AAGCCAAACT GAAAAACTGA AAAACTCAAA AGACTGAAGT GGCCATTCAC
  AGCAAGAGAG AAAGCCAACA GTTTAAGTCT ACACAAATTG CTACCACGAT GGGCTAGAGA
  GATGGCTTAG AGCGTCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8809154	WI_WGS_3_109290014	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6402953					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108702816 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	441 bp upstream
Rr583317	regulatory region 583317	169 bp proximal
Rr583318	regulatory region 583318	452 bp proximal
Stxbp3	syntaxin binding protein 3	Intron