rs6404055 SNP Detail

Summary

• ID
  rs6404055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108703011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATGCCT CAAGTGTCTG
  ACAATGTCTG CCCAGACAAT TGGCTGACTG CAACTACACA GGCACAAACA ACCACTAAGC
  CAAACTGAAA AACTGAAAAA CTCAAAAGAC TGAAGTGGCC ATTCACAGCA AGAGAGAAAG
  CCAACAGTTT AAGTCTACAC AAATTGCTAC CACGATGGGC TAGAGAGATG GCTTAGAGCG
  Y
  CAGTATTGCT CTTGCAGAGG ATCTGGTTCA CACCCGTGAC TCCAACCCCA GGGGACCCAG
  ACATCTCTGG GTTCTGTGGA CACCTGCACA CACATGTACA TACTTCCCCC AACCTACATA
  TATCCAGCAC TAGGCCGACA GAGGCAGGCA GATCTCTGAG TTCAAAGCTA GCCTGATCTA
  CAGAGTGAGT TCTAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8810260	WI_WGS_3_109290209	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6404055					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108703011 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	246 bp upstream
Rr583317	regulatory region 583317	within coordinates
Rr583318	regulatory region 583318	257 bp proximal
Stxbp3	syntaxin binding protein 3	Intron