rs6404118 SNP Detail

Summary

• ID
  rs6404118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33574742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGATTTTTTT
  aaaatcacat gattatctca atagatgcag aaaacacctt tgacaaaatc caatataata
  aaataataaa agtcctagag agactaggaa cagggaacat gtaaaggaaa cccatcanaa
  caacagctga ttcccagtgg aagttntaaa aggcagaaga gtctggacca gggtacttca
  aggtctaaaa gaccatggat accaacttac agtactgtac ccagcataac ttcctgccat
  R
  gttgaaggaa agaggaaaat gctctgtggt ataaacacgc caaaagaatt catgcccacc
  aaactggtcc tagagaggat accaaaagca attctttaga ctgaagagag gaaaaaggac
  aaggaagaca agtgaagctg taattgctga agcacaaaAG AGGATGAATG CAAAGAGCAA
  ACCAGGAGCC AGCNCACANC TTAAACCAGA ACCAGGAGCC AGCNCACACC TTNAACCAGA
  ACCAGGAGCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8810324	WI_WGS_5_32115197	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6404118					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33574742 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	456 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates