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rs6404687 SNP Detail
Summary
  • ID
    rs6404687
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:108703146 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAAGCCAAC AGTTTAAGTC
    TACACAAATT GCTACCACGA TGGGCTAGAG AGATGGCTTA GAGCGTCAGT ATTGCTCTTG
    CAGAGGATCT GGTTCACACC CGTGACTCCA ACCCCAGGGG ACCCAGACAT CTCTGGGTTC
    TGTGGACACC TGCACACACA TGTACATACT TCCCCCAACC TACATATATC CAGCACTAGG
    S
    CGACAGAGGC AGGCAGATCT CTGAGTTCAA AGCTAGCCTG ATCTACAGAG TGAGTTCTAG
    GACAGCCAGG GTTACACAGA GAAACTGTCT CAAAAATCGA AAACGAAACA GACTTAAGCA
    TGAAAACTCA CCACAGAAAG CAACTCAGAG TTGCTAAAAG GGTCTGTTTT CAATCAAAGG
    TTGTAGATAT AGAAAGAAAC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8810893 WI_WGS_3_109290344 WI MOUSE f SNP C G
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6404687 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:108703146 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm66359 predicted gene, 66359 111 bp upstream
Rr583317 regulatory region 583317 within coordinates
Rr583318 regulatory region 583318 122 bp proximal
Stxbp3 syntaxin binding protein 3 Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory