rs6404688 SNP Detail

Summary

• ID
  rs6404688
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108703147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCAACA GTTTAAGTCT
  ACACAAATTG CTACCACGAT GGGCTAGAGA GATGGCTTAG AGCGTCAGTA TTGCTCTTGC
  AGAGGATCTG GTTCACACCC GTGACTCCAA CCCCAGGGGA CCCAGACATC TCTGGGTTCT
  GTGGACACCT GCACACACAT GTACATACTT CCCCCAACCT ACATATATCC AGCACTAGGC
  M
  GACAGAGGCA GGCAGATCTC TGAGTTCAAA GCTAGCCTGA TCTACAGAGT GAGTTCTAGG
  ACAGCCAGGG TTACACAGAG AAACTGTCTC AAAAATCGAA AACGAAACAG ACTTAAGCAT
  GAAAACTCAC CACAGAAAGC AACTCAGAGT TGCTAAAAGG GTCTGTTTTC AATCAAAGGT
  TGTAGATATA GAAAGAAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8810894	WI_WGS_3_109290345	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6404688					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108703147 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	110 bp upstream
Rr583317	regulatory region 583317	within coordinates
Rr583318	regulatory region 583318	121 bp proximal
Stxbp3	syntaxin binding protein 3	Intron