rs6405173 SNP Detail

Summary

• ID
  rs6405173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85390704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA ATGACGTAGG TTGGCGCCGC
  R
  AACCACTTCC GGATGCCCAT ATAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8811380	WI_WGS_8_84361725	WI	MOUSE	f	SNP	A			G
ss46172440	mCV24192298	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss145391617	ENSMUSSNP7164976	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss322751240	CHEV_8_87187974	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6405173					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85390704 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	902 bp distal
Cpgi20703	CpG island 20703	within coordinates
Cpgi20704	CpG island 20704	772 bp proximal
Gm26664	predicted gene, 26664	15 bp upstream
Gm50464	predicted gene, 50464	1166 bp upstream
Ier2	immediate early response 2	1223 bp upstream
Rr368564	regulatory region 368564	1487 bp downstream
Rr368565	regulatory region 368565	within coordinates
Rr368566	regulatory region 368566	778 bp upstream
Rr401023	regulatory region 401023	1018 bp downstream
Tssr2627	transcription start site region 2627	1023 bp upstream
Tssr78424	transcription start site region 78424	1069 bp downstream
Tssr78425	transcription start site region 78425	136 bp upstream
Tssr78426	transcription start site region 78426	168 bp upstream
Tssr78427	transcription start site region 78427	463 bp upstream
Tssr82107	transcription start site region 82107	1216 bp upstream
Tssr82108	transcription start site region 82108	1060 bp upstream
Tssr82109	transcription start site region 82109	1004 bp upstream
Tssr82110	transcription start site region 82110	120 bp upstream