rs6405183 SNP Detail

Summary

• ID
  rs6405183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45453482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTTGAG TGCTGGGAAT
  AACCTGTATG TATTATCATG CCCAGCTTTG AAGTCTTTGA TTCGCCCACT GGGGCCTGTC
  ATGGGAACTG AGATTGCATT TTACCAAATT AACATTTGTT TTTCCTGTTT GTCACTTAGA
  TTTTCCTCAA AGTTTGGAGT TGGCATCATT TTCTGTGCTA AGTACAGGGA TATATATGAC
  R
  GGGCATACGA TAGAGCTGTG TCCTTGTTCT TAGAAATGTA CTCAGCAAGA GAAACAAGGC
  ATTGTTAAGT CACAATAAAG GAAAAAAAAA CCTACAATTT TGCTTTCGAA CTTGAGTTTT
  ATTACTGTTC AAAATTTAAT TTGTAAGCAG GATAGTTAAG GCATTTGTTT ATAGAAAAGT
  ACATCTGTTT TAGCTTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811390	WI_WGS_10_45695459	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405183					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45453482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	257 bp proximal
Gm3805	predicted gene 3805	98 bp downstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	443 bp upstream
Rr224766	regulatory region 224766	118 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	443 bp proximal
Tssr93194	transcription start site region 93194	425 bp upstream
Tssr93195	transcription start site region 93195	530 bp upstream
Tssr97528	transcription start site region 97528	714 bp downstream
Tssr97529	transcription start site region 97529	735 bp downstream