rs6405217 SNP Detail

Summary

• ID
  rs6405217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33574936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATAGTT GAAGGAAAGA
  GGAAAATGCT CTGTGGTATA AACACGCCAA AAGAATTCAT GCCCACCAAA CTGGTCCTAG
  AGAGGATACC AAAAGCAATT CTTTAGACTG AAGAGAGGAA AAAGGACAAG GAAGACAAGT
  GAAGCTGTAA TTGCTGAAGC ACAAAAGAGG ATGAATGCAA AGAGCAAACC AGGAGCCAGC
  R
  CACACCTTAA ACCAGAACCA GGAGCCAGCA CACACCTTAA ACCAGAACCA GGAGCCAGCA
  CACACCTTTA ACCAGAACAA GGTTTTAATA ATATCCTTAG CTCCCCAGTC AAGAAACACT
  GGTTTGTTGA ATGGATTGAG AACAAAGATT TAAAGATCGG GGCCACCTTA AAGCACAAGG
  ATAGAAAAAA GTATCCCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811424	WI_WGS_5_32115391	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405217					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33574936 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	262 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates