rs6405221 SNP Detail

Summary

• ID
  rs6405221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33574941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         agaccatgga
  taccaactta cagtactgta cccagcataa cttcctgcca tngttgaagg aaagaggaaa
  atgctctgtg gtataaacac gccaaaagaa ttcatgccca ccaaactggt cctagagagg
  ataccaaaag caattcttta gactgaagag aggaaaaagg acaaggaaga caagtgaagc
  tgtaattgct gaagcacaaa AGAGGATGAA TGCAAAGAGC AAACCAGGAG CCAGCNCACA
  Y
  CTTAAACCAG AACCAGGAGC CAGCNCACAC CTTNAACCAG AACCAGGAGC CAGCACACAC
  CTTTAACCAG AACNAGGTTT TAATAATATC CTTAGCTCCC CAGTCAAGAA ACACTGGTTT
  GTTGAATGGA TTGAGAACAA agatttaaag atcggggcca ccttaaagca caaggataga
  aaaaagtatc ccaagcaagt gcaaagagga aggaagcagg tgtcactCAC TACCTTTTTT
  TTTTTTTTTT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811428	WI_WGS_5_32115396	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405221					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33574941 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	257 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates