rs6405556 SNP Detail

Summary

• ID
  rs6405556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101844979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTTG CAGATGAGTC
  TGCGTGGGTT TATGCAGGAA ATGGAATTAT ACAAAAATAT TGGGCTCTTA TGACTGAGTA
  CCTTTTTGGT AAATCTCTTT TTTCCATACA TTATGAGTGA AAGAATTTTC TTATACAAAA
  GGTATAAAAA CTAAATAATA CTGCACCCTA CCACAGCCCA TCAGAGGAAG AGGAAAGAGC
  R
  TCTGCCGTAT TAGTTACTGC TTACTAAACA TAGAACTCGA GTCACTGTCC AGTACAGTCA
  AGGTATACCT CATTCTGCAG GGTACTGGTT TCCATTTGCT TCTGTTTCAG GGCCAACATA
  ACTTGGTCTC TTTCCTGCTG AAACGTAACT GTCTTCTCCT GCATTGATTT AACTGCATTT
  AAAAGTTGAT TTAGCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8811764	WI_WGS_12_96092901	WI	MOUSE	f	SNP							A		G
ss47245685	NES11403687	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6405556					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47245685	NES11403687	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101844979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr471450	regulatory region 471450			1901 bp distal
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1818 bp downstream