rs6405625 SNP Detail

Summary

• ID
  rs6405625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33574966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         Ctgtacccag
  cataacttcc tgccatngtt gaaggaaaga ggaaaatgct ctgtggtata aacacgccaa
  aagaattcat gcccaccaaa ctggtcctag agaggatacc aaaagcaatt ctttagactg
  aagagaggaa aaaggacaag gaagacaagt gaagctgtaa ttgctgaagc acaaaAGAGG
  ATGAATGCAA AGAGCAAACC AGGAGCCAGC NCACANCTTA AACCAGAACC AGGAGCCAGC
  R
  CACACCTTNA ACCAGAACCA GGAGCCAGCA CACACCTTTA ACCAGAACNA GGTTTTAATA
  ATATCCTTAG CTCCCCAGTC AAGAAACACT GGTTTGTTGA ATGGATTGAG AACAAagatt
  taaagatcgg ggccacctta aagcacaagg atagaaaaaa gtatcccaag caagtgcaaa
  gaggaaggaa gcaggtgtca ctCACTACCt tttttttttt tttttttttt tttGAGACTG
  TGTCTTCCTA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811833	WI_WGS_5_32115421	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405625					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33574966 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	232 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates