rs6405642 SNP Detail

Summary

• ID
  rs6405642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33574975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACGCCA AAAGAATTCA
  TGCCCACCAA ACTGGTCCTA GAGAGGATAC CAAAAGCAAT TCTTTAGACT GAAGAGAGGA
  AAAAGGACAA GGAAGACAAG TGAAGCTGTA ATTGCTGAAG CACAAAAGAG GATGAATGCA
  AAGAGCAAAC CAGGAGCCAG CACACACCTT AAACCAGAAC CAGGAGCCAG CACACACCTT
  W
  AACCAGAACC AGGAGCCAGC ACACACCTTT AACCAGAACA AGGTTTTAAT AATATCCTTA
  GCTCCCCAGT CAAGAAACAC TGGTTTGTTG AATGGATTGA GAACAAAGAT TTAAAGATCG
  GGGCCACCTT AAAGCACAAG GATAGAAAAA AGTATCCCAA GCAAGTGCAA AGAGGAAGGA
  AGCAGGTGTC ACTCACTACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811850	WI_WGS_5_32115430	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405642					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33574975 () rs orientation: forward

Symbol	Name	Function Class
Tssr45822	transcription start site region 45822	223 bp upstream
Uvssa	UV stimulated scaffold protein A	within coordinates