rs6405737 SNP Detail

Summary

• ID
  rs6405737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:148140138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTTAG GAACACTTGT
  TTTTGTAGAG AACCCTGGGG GATGGTACCA CCCACATCAC CTACATGATG GCTCACAACC
  ACCTGTGACT CCAGTTCAAT GGATCCAACA CTCTCTTCTG ACCTTTGTGC ACATACATGC
  AGGCAACACA CTCATACACA CAAAATAAAT ACATCTTTAA AAAATTAAAG ATAGCCTTAG
  R
  TTTATCTCCT AGTCATAGTA CTGGTGAAAA GCACCAGCCA GCCACTGCAA AAGTGCAGAA
  AGAACGTGAC CTGTGACCTG CTGAACACAC ACTGTCAAAA CTCACCTGTT TAATACTGTG
  AAGACCAGTG TGCCTGGGTC TAAATGGCCA CTGACAATTG GGCAGATCTA GTAGCTTTTC
  CTATTCCCCC TTTTACTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8811945	WI_WGS_6_148979103	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6405737					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:148140138 () rs orientation: forward

Symbol	Name	Function Class
Tmtc1	transmembrane and tetratricopeptide repeat containing 1	within coordinates