rs6405862 SNP Detail

Summary

• ID
  rs6405862
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69028397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGCTCCT GCCTCAGCAA
  ACATTTTGAA TTCACACAGG TTAGTAGCCA GAATGACTCT TATGTCATAG ACATTTGCTG
  GTAATATGAG CAGCTTGACT AGTGAAAATG TTAAACTCTA TACGTGCTTC TAAGTATGTG
  CCACCATGCC ATGGCCAGCT CTGTTGTATT TTGTAGGTGC CGCTCAATAT TCTCACAGCA
  S
  TGTCTAGCAG ACGGAGTCTT CCTGAACGCT GACTTTACCA AATCTAAATG GAAAGCAGGT
  AAGTTTTTAG TGTTAGAAGT TCATAAATGA TACAAAATTC CAAAACTCTC TGTGCAGAAA
  GCAATAGTAA TGCCTCACCT ATAAAATATG CTAGTAGTGC ATTAGGCTGA GAAAAATTAA
  AGATAATAGG ATATAGTATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8812070	WI_WGS_3_69723627	WI	MOUSE	f	SNP							C	G
ss47004438	NES10777825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6405862					SNP	C	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47004438	NES10777825	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69028397 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	within coordinates
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	1815 bp distal